Dataset Details - RDF Portal

Orthologous MAtrix (OMA) RDF

Website

The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes. The OMA RDF is a view of the OMA database in RDF.

Dataset specifications

Tags	Genome Gene Phylogeny/Classification
Provenance	Original
Registration	Added by RDF portal
Data provider	SIB Swiss Institute of Bioinformatics
Creator	Adrian M. AltenhoffSIB Swiss Institute of Bioinformatics Christophe DessimozSIB Swiss Institute of Bioinformatics Tarcisio Mendes de FariasSIB Swiss Institute of Bioinformatics
Issued	2023-07-01
Licenses	Creative Commons Attribution 4.0 International
Version	Jul2023
Download	https://rdfportal.org/download/oma
SPARQL Endpoint	https://rdfportal.org/sib/sparql

Dataset statistics

Triples: 584249484

Subjects: 137419193

Properties: 36

Objects: 334832200

Classes: 25

SPARQL example queries

Example 1

Run on Endpoint

# Endpoint: https://sparql.omabrowser.org/sparql/
# Description: Get ortholog cluster members

PREFIX orth: <http://purl.org/net/orth#>
PREFIX dct: <http://purl.org/dc/terms/>

SELECT ?cluster_id ?protein_id
FROM <http://omabrowser.org/graph>
WHERE {
    ?ClusterOfOrthologs a orth:OrthologsCluster ;
        dct:identifier ?cluster_id ;
        orth:hasHomologousMember / dct:identifier ?protein_id .
}
LIMIT 100

Datasets

Orthologous MAtrix (OMA) RDF

Dataset specifications

Dataset statistics

SPARQL example queries

Example 1

Schema diagram