Datasets

NCBI Gene RDF

Website

NCBI Gene RDF is a translation of NCBI Gene data into RDF.

Dataset specifications

Tags
Gene
Provenance Third party
Registration Submitted
Data provider
  • National Center for Biotechnology Information
Creator
  • Hirokazu ChibaDatabase Center for Life Science
Issued 2022-05-25
Licenses
  • https://www.ncbi.nlm.nih.gov/home/about/policies/
Version release_20230525
Download https://rdfportal.org/download/ncbigene
SPARQL Endpoint https://rdfportal.org/ncbi/sparql

Dataset statistics

Triples
550262723
Subjects
57768578
Properties
16
Objects
160736140
Classes
1

SPARQL example queries

Example 1

Run on Endpoint 
# Endpoint: https://togodx.dbcls.jp/human/sparql
# Description: Get gene info

PREFIX insdc: <http://ddbj.nig.ac.jp/ontologies/nucleotide/>
PREFIX ncbio: <https://dbcls.github.io/ncbigene-rdf/ontology.ttl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX dct: <http://purl.org/dc/terms/>

SELECT ?type_of_gene ?label ?gene_description
FROM <http://rdf.integbio.jp/dataset/togosite/homo_sapiens_gene_info>
WHERE {
    ?Gene a insdc:Gene ;
        ncbio:typeOfGene ?type_of_gene ;
        rdfs:label ?label .
    OPTIONAL {
        ?Gene dct:description ?gene_description .
    }
}
LIMIT 100

Schema diagram

Schema diagram for ncbigene
Schema diagram for ncbigene