Dataset Details - RDF Portal

Nucleic Acid Drug Database

Website

DB is focused on nucleic acid drugs known as biopharmaceuticals and displayed approval drugs and information on three phases of clinical trial stage.

Dataset specifications

Tags	Drug/Chemical RNA Sequence Structure Journal article/Report/Bibliography
Provenance	Original
Registration	Submitted
Data provider	Molecular Profiling Research Center for Drug Discovery (molprof), The National Institute of Advanced Industrial Science and Technology (AIST)
Creator	Kazuhiko FukuiMolecular Profiling Research Center for Drug Discovery (molprof), The National Institute of Advanced Industrial Science and Technology (AIST) Takayuki AmemiyaMolecular Profiling Research Center for Drug Discovery (molprof), The National Institute of Advanced Industrial Science and Technology (AIST) Hiroshi KounoMolecular Profiling Research Center for Drug Discovery (molprof), The National Institute of Advanced Industrial Science and Technology (AIST)/Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science
Issued	2019-05-14
Licenses	Attribution-ShareAlike 2.1 Japan (CC BY-SA 2.1)
Version	2019-05-14
Download	https://rdfportal.org/download/nadd
SPARQL Endpoint	https://rdfportal.org/primary/sparql

Dataset statistics

Triples: 948

Subjects: 112

Properties: 8

Objects: 568

Classes: 4

SPARQL example queries

Example 1

Run on Endpoint

# がんをターゲットとする核酸医薬品の一覧の取得

PREFIX obo: <http://purl.obolibrary.org/obo/>
SELECT ?entry ?disease
WHERE {
    ?entry obo:RO_0002606 ?disease FILTER ( ?disease = obo:MONDO_0005097 || ?disease = obo:MONDO_0005192 || ?disease = obo:MONDO_0005233 || ?disease = obo:MONDO_0005575 || ?disease = obo:MONDO_0007256 || ?disease = obo:MONDO_0008315 ) #Including cancer
}

Example 2

Run on Endpoint

# ターゲット分子の立体構造が解かれている核酸医薬品の一覧の取得

PREFIX PDBr: <https://rdf.wwpdb.org/pdb/>
PREFIX sio: <http://semanticscience.org/resource/>
SELECT ?entry ?molecule
WHERE {
    ?entry sio:SIO_010423 ?molecule FILTER REGEX ( str(?molecule), "pdb")
}