Datasets

HomoloGene RDF

HomoloGene RDF is a translation of HomoloGene data into RDF.

Dataset specifications

Tags
Genome Gene Phylogeny/Classification
Provenance Third party
Registration Submitted
Data provider
  • National Center for Biotechnology Information
Creator
  • Hirokazu ChibaDatabase Center for Life Science
Issued 2023-05-17
Licenses
  • https://www.ncbi.nlm.nih.gov/home/about/policies/
Version release_20230517
Download https://rdfportal.org/download/homologene
SPARQL Endpoint https://rdfportal.org/primary/sparql

Dataset statistics

Triples
1553120
Subjects
319471
Properties
5
Objects
773372
Classes
3

SPARQL example queries

Example 1

Run on Endpoint
# Endpoint: https://rdfportal.org/primary/sparql
# Description: Get groups of orthologous genes

PREFIX orth: <http://purl.org/net/orth#>

SELECT ?Group ?gene
FROM <http://rdfportal.org/dataset/homologene>
WHERE {
    ?Group a orth:OrthologsCluster ;
        orth:hasHomologousMember ?gene .
    ?gene a orth:Gene .
}
LIMIT 100

Schema diagram

Schema diagram for homologene
Schema diagram for homologene