Ensembl RDF
Ensembl is a collection of automatically annotated genome databases for vertebrates and a number of eukaryotes, integrated with all other relevant biological data available. This RDF dataset is generated by the RDF Portal based on files distributed by Ensembl.
Dataset specifications
| Tags |
|
| Provenance |
Third party
|
| Registration |
Added by RDF portal
|
| Data provider |
|
| Creator |
-
Shuya IkedaDatabase Center for Life Science
|
| Issued |
2026-02-27 |
| Licenses |
-
http://ensembl.org/info/about/legal/disclaimer.html
|
| Version |
115 |
| Download |
/website/download/#ensembl
|
| SPARQL Endpoint |
https://rdfportal.org/ebi/sparql
|
Dataset statistics
- Triples
- 18523657272
- Subjects
- 3820001372
- Properties
- 28
- Objects
- 5000274877
- Classes
- 95
SPARQL example queries
# Endpoint: https://rdfportal.org/ebi/sparql
# Description: Ensembl gene and chromosome
# Parameter: ensg_taxonomy: (example: taxonomy:9606)
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX terms: <http://rdf.ebi.ac.uk/terms/ensembl/>
PREFIX so: <http://purl.obolibrary.org/obo/so#>
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX obo: <http://purl.obolibrary.org/obo/>
PREFIX taxonomy: <http://identifiers.org/taxonomy/>
SELECT ?ensg_id ?ensg_label ?ensg_chromosome ?ensg_taxonomy
FROM <http://rdfportal.org/dataset/ensembl>
WHERE {
VALUES ?ensg_taxonomy { taxonomy:9606 }
?EnsemblGene a terms:EnsemblGene ;
dcterms:identifier ?ensg_id ;
rdfs:label ?ensg_label ;
so:part_of ?ensg_chromosome ;
obo:RO_0002162 ?ensg_taxonomy .
}
LIMIT 100